Publications

  • 2017

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    Song, S., D.-Y. Oh, G.-J. Cho, D. H. Kim, Y.-S. Park and K. Han (Submitted) Targeted next-generation sequencing for identifying genes related to horse temperament. Genes & Genomics.

     

    Ahn, Y. J., K. Markkandan, I.-P. Baek, S. Mun, W. Lee, H.-S. Kim and K. Han (Under Review) Comparison and validation of variants from whole-exome and whole-genome sequencing platforms in 10 Korean individuals. Genes & Genomics.

     

    Lee, T., K. Han, DO Barrett, S. Park, SA  Soper and M. C. Murphy (Under Review) Simple, repeatable micro-assembly technology for polymer, microfluidic modules. Sensors and Actuators. B, Chemical.

     

    Panupon, T.*, S. Kim*, S. Kornsorn and K. Han (In Press) Structural variations generated by simian foamy virus-like (SFV) in the Crocodylus siamensis. Genes & Genomics.

     

    Mun, S., Y.-J. Kim, K. Markkandan, W. Shin, S. Oh, J. Woo, J. Yoo, H. An,  K. Han (In Press)  Draft genome of the Korean short-necked clam, Ruditapes philippinarum. Genome Biology and Evolution.

     

    Kim, Y.-J., B. Yoon, K. Han and B. C. Park (In Press) Comprehensive transcriptome profiling of balding and non-balding scalps in Trichorhinophalangeal syndrome type I patient.  Annals of dermatology.

     

    Yoon, B., Y.-J. Kim, S.-Y. Son, K. Han@ and B. C. Park@ (2017) Novel mutation candidates in Tricho-rhino-phalangeal syndrome type Ⅰ(TRPS) based on the Korean familial Whole exome sequencing analysis. Genes & Genomics. 39(4):417-422

     

    Lee, J., S. Mun, D.H. Kim, C. Cho, D.-Y. Oh and K. Han (2017) Chicken (Gallus gallus) Endogenous Retrovirus Generates Genomic Variations in the Chicken Genome . Mobile DNA.  8:2

  • 2016

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    Choi, S., J. H. Go, E. K. Kim, H. Lee, W. M. Lee, C.-S. Cho and K. Han (2016) Mutational analysis of extranodal NK/T-cell lymphoma using targeted sequencing with comprehensive cancer panel.

    Genomics & Informatics. 14(3):78-84

     

    Kim, S., C.-S. Cho, K. Han and J. Lee (2016) Structural variation of Alu element and human disease.

    Genomics & Informatics. 14(3):70-77

     

    Kim, S., H. J. Jung, S. H. Han, S. J. Lee, J. S. Kwon, M. G. Kim, H. Chu, H. Chen, K. Han, H. Kwak, S. Park, H. J. Joo, K. Min, M. Jeong, B. C, Kim, J. Bhak (2016) An adaptive detection method for fetal chromosomal aneuploidy using cell-free DNA from 447 Korean women. BMC Medical Genomics. 9:61

     

    Kang, K., J.-H. Bae, K. Han, E. S. Kim, T.-O. Kim and J. M. Yi (2016) A Genome-Wide Methylation Approach Identifies a New Hypermethylated Gene Panel in Ulcerative Colitis. International Journal of Molecular Sciences. 17(8) 1291

     

    White, T. E., A. Brandariz-Nuñez, K. Han, S. L. Sawyer, B. Kim and  F. Diaz-Griffero (2016) Modulation of LINE-1 Retrotransposition by a Human SAMHD1 Polymorphism. Virology Reports. 6:53-60

     

    Kim, S., H. J. Jung, S. H. Han, S. J. Lee, J. S. Kwon, M. G. Kim, H. Chu, H. Chen, K. Han, H. Kwak, S. Park, H. J. Joo, B. C. Kim, J. Bhak (2016) Comparison of two high-throughput semiconductor chip sequencing platforms in noninvasive prenatal testing for Down syndrome in early pregnancy. BMC Medical Genomics. 30;9(1):22

     

    Oh, D., B. Son , B. Kim, S. Mun, M.H. Oh, S. Oh, J. Ha, J. Yi, S. Lee and K. Han (2016) Whole Genome Re-sequencing of three domesticated chicken species.  Zoological Science. 33(1):73-7

     

    Ha, J.*, W. Lee*, S. Mun, Y.-J. Kim and K. Han (2016) Identification of transposable element-mediated deletions in 27 korean individuals based on whole genome sequencing data. Genes & Genomics. 38:179-192

     

    Kim, S., Y.-J. Kim and K. Han (2016) Analysis of L1-chimeric transcripts derived from bidirectional promoter of human-specific L1. Genes & Genomics. 38(1):69-79

     

    Lee, J.-Y., , J.-J. Ha, Y.-S. Park, J.-K. Yi, S. Lee, S. Mun, K. Han, J.-J. Kim, H.-J. Kim and D.-Y. Oh (2016) Relationship Between Single Nucleotide Polymorphisms in the PPARγ Gene and Fatty Acid Composition in Commercial Korean Native Cattle.  Asian-Australasian Journal of Animal Sciences.  29(2):184-194

  • 2015

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    Park, S.-J., M. Kumar, H.-i. Kwon,  R.-K. Seong, K. Han, J.-m. Song, C.-J. Kim, Y.-K. Choi and O. S. Shin (2015) Dynamic changes in host gene expression associated with H5N8 avian influenza virus infection in mice. SCIENTIFIC REPORTS. 5:16512

     

    Chung, O., S. Jin, Y. S. Cho, J. Lim, H. Kim, S. Jho, H.-M. Kim, J. H. Jun, H. J. Lee, A. Chon, J. Ko, J. Edwards, J. A Weber, K. Han, S. J O'Brien, A. Manica, J. Bhak and W. K. Paek (2015) The first whole genome and transcriptome of the Cinereous vulture: vulture's dietary adaptation in gastric and immune defense systems and convergent evolution between the Old and New World vultures. Genome Biology. 16:215

     

    Kim, Y.-J., K. Ahn, J.-A. Gim, M. H. Oh, K. Han and H.-S. Kim (2015) Gene structure variation in segmental duplication in block C of human chromosome 7q 11.23 during primate evolution. Gene. 573(2):285-95

     

    Gim, J.-A., K. Han and H.-S. Kim (2015) Identification and Expression Analysis of Human Endogenous Retrovirus Y (HERV-Y) in Various Human Tissues. Archives of Virology. 160(9):2161-2168

     

    Han, K., H. J. Jin, H.-S. Kim and N.-S. Kim (2015) Meeting Report: The Biology of Genomes and Proteomes. Genes & Genomics. 37(7):567-570

     

    Oh, M. H., J. C. Lee, J. Kim, C. H. Choi and K. Han (2015) Simple method for markerless gene deletion of Acinetobacter baumannii. Applied and environmental microbiology. 81(10):3357-68

     

    Gim, J.-A., C. P. Hong, D.-S. Kim, J.-W. Moon, Y. Choi, J. Eo, Y.-J. Kwon, J.-R. Lee, Y.-D. Jung, J.-H. Bae, B.-H Choi, J. Ko, S. Song, K. Ahn, H.-S. Ha, Y. M. Yang, H.-K. Lee, K.-D. Park, K.-T. Do, K. Han, J. M. Yi, H.-J. Cha, S. Ayarpadikannan, B.-W. Cho, J. Bhak and H.-S. Kim (2015) Genome-Wide Analysis of DNA Methylation before-and after Exercise in the Thoroughbred Horse with MeDIP-Seq.  Molecules and cells. 38(3):210-220

     

    Lee, W., S. Mun, K. Kang, L. Hennighausen and K. Han (2015) Genome-wide target site triplication of Alu elements in the human genome. Gene. 561(2):283-291

     

    Kim, Y.-J and K.Han (2015) Endogenous retrovirus-mediated genomic variations in chimpanzees. Mobile Genetic Elements. 4(6):1-4

     

    Kim, T., W. Lee, K. Han and K. Kang (2015) An automated analysis pipeline for a large set of ChIP-seq data: AutoChIP Genes & Genomics. 37(3):305-311

     

    Ayarpadikannan, S., H.-E Lee, K. Han and H.-S. Kim (2015) Transposable element-driven transcript diversification and its relevance to genetic disorders. Gene. 558(2):187-194

     

    Kwak, Y., Y.-J. Kim, J. Xing and K. Han (2015) Evolutionary fate of SVA2 elements in primate genomes. Genes & Genomics. 37(2):153-159

     

    Kang, D., Y.-J. Kim, K. Hong and K. Han (2015) TE composition of human long noncoding RNAs and their expression patterns in human tissues. Genes & Genomics. 37(1)87-95

     

    Lee, J., S. Mun, Y.-J. Kim, H.-S. Kim and K. Han (2015) Identification of human-specific AluS element through comparative genomics. Gene. 555(2):208-216

  • 2014

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    Jun, J., Y. S. Cho, H. Hu, H.-M. Kim, S. Jho, P. Gadhvi, K. M. Park, J. Lim, W. K. Paek, K. Han, A. Manica, J. Edwards and J. Bhak (2014) Whole genome sequence and analysis of the Marwari horse breed and its genetic origin.

    BMC Genomics. 15(Suppl 9):S4

     

    Seo, I., J. W. Lee, S.-Y. Son and K. Han (2014) Comparative study of different molecular methods for typing of Acinetobacter baumannii clinical isolates from University Hospitals. Genes & Genomics. 36:551-558

     

    Lee, J.-R., C. P. Hong, J.-W. Moon, Y.-D Jung, D.-S. Kim, T.-H. Kim, J.-A.  Gim, J.-H. Bae, Y. Choi, J. Eo, Y.-J. Kwon, S. Song, Y. M. Yang, H.-K. Lee, K.-D. Park, K. Ahn, K.-T. Do, H.-S. Ha, K. Han, J. M. Yi, H.-J. Cha, B.-W. Cho, J. Bhak and H.-S. Kim (2014) Genome-Wide Analysis of DNA methylation patterns in Horse. BMC Genomics. 15:598

     

    Jung, S.-H., S.-H. Yim, H.-J. Hu, K. H. Lee, J.-H. Lee, D.-H. Sheen, M.-K. Lim, S.-Y. Kim, S.-W. Park, S.-H. Kim, K. Han, T.-H. Kim, S.-C. Shim and Y.-J. Chung (2014) Genome-wide copy number variants analysis identifies deletion variants associated with ankylosing spondylitis. Arthritis and Rheumatism. 66:2013-2112

     

    Mun, S., J. Lee, Y.-J. Kim, H.-S. Kim and K. Han (2014) Chimpanzee-Specific Endogenous Retrovirus Generates Genomic Variations in the Chimpanzee Genome. PLoS One. 9:e101195

     

    Park, C. S., K. Han and T.-Y. Ahn (2014) Mucilaginibacter koreensis sp. nov., isolated from leaf mold. International Journal of Systematic and Evolutionary Microbiology. 64:2274-2279

     

    Lee, S.,  S. Oh, K. Kang and K. Han (2014) BLAT-based Comparative Analysis for Transposable Elements: BLATCAT. BioMed Research International.  2014: 730814

  • 2013

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    Mun, S., J. Lee, S. Lee, K. Han, and T.-Y. Ahn (2013) Phylogeny of Flavobacteria group isolated from freshwater using a multilocus sequencing analysis. Genomics & Informatics. 11: 272-276

     

    Shin, K. S., K. Han and S. B. Hong (2013) Septicemia Caused by Leuconostoc lactis with Intrinsic Resistance to Vancomycin in a Patient with Biliary Stent. Journal of Experimental & Biomedical Sciences. 19: 1-4

     

    Han, K., C. G. Kim, N.-S. Kim (2013) Frontiers in Genetics: Genomics and Epigenomics.

    Genes & Genomics. 35: 559-562

     

    Ahn, K., J.-H. Bae, J.-A. Gim, J.-R. Lee, Y.-D. Jung, K.-D. Park, K. Han, B.-W. Cho & H.-S. Kim (2013) Identification and characterization of transposable elements inserted into the coding sequences of horse genes. Genes & Genomics. 35: 483-489

     

    Han, K., J. Lee, H.-S. Kim, K. Yang and J. M. Yi (2013) DNA methylation of mobile genetic elements in human cancers. Genes & Genomics. 35: 265-271

     

    Hong, S. B.*, K. S. Shin*, J. Ha and K. Han (2013) Coexistence of blaOXA-23 with armA in multi-drug resistant Acinetobacter baumannii isolated from a hospital in South Korea. Journal of Medical Microbiology. 62: 836-844

     

    Shin, W., J. Lee, S.-Y. Son, K. Ahn, H.-S. Kim and K. Han (2013) Human-specific HERV-K insertion causes genomic variations in the human genome. PLoS One. 8: e60605

     

    Ahn, K., J.-A. Gim, H.-S. Ha, K. Han and H.-S. Kim (2013) The novel MER transposon-derived miRNAs in human genome. Gene. 512: 422-428

  • 2012

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    Kim, Y.-J, J. Lee and K. Han (2012) Transposable elements; no more 'Junk DNA'. Genomics & Informatics. 10: 226-233

     

    Lee, S., H.-Y, Weon, K. Han and T.-Y. Ahn (2012) Flavobacterium dankookense sp. nov., isolated from a freshwater reservoir and emended descriptions of Flavobacterium cheonanense, F. chungnamense, F. Koreenes and F. aquatile. International Journal of Systematic and Evolutionary Microbiology. 62: 2378-2382

     

    Moon, J.-W, K. Ahn, J.-H. Bae, G.-H. Nam, B.-W. Cho, K.-D. Park, H.-K. Lee, Y.-M. Yang, T.-H. Kim, H.-H. Seong, K. Han and H.-S. Kim (2012) mRNA sequence analysis and quantitative expression of the ADAMTS4 gene in the thoroughbred horse. Genes & Genomics. 34: 441-445

     

    Nomin, B., J. Lee, J. Lee, S. B. Hong, S. Oh* and K. Han* (2012) UniPrimer: a web-based primer design tool for comparative analyses of primate genomes. Comparative and Functional Genomics. 2012: 520732

     

     Lee, J., J. Ha, S.-Y. Son and K. Han (2012) Human genomic deletions generated by SVA associated events.

    Comparative and Functional Genomics. 2012: 807270

     

    Ha, H.-S., Y.-C. Lee, S.-J. Park, Y.-D. Jung, K. Ahn, J.-W. Moon, K. Han, K.-B. Oh, T.-H. Kim, H.-H. Seong and H.-S. Kim (2012) In vitro CpG methylation and garcinol reduce PERV LTR promoter activity.

    Genes & Genomics. 34: 217-222

     

    Hong, S. B., K. Han, B. R. Son, K. S. Shin and B. C. Rim (2012) First case of Norcardia nova spinal abscess in an immunocompetent patient. Brazilian Journal of Infectious Diseases 16: 196-199

     

    Kim, A.-R., S. Lee, K. Han and T.-Y. Ahn (2012) Arenimonas aquaticum sp. nov., a member of the grammaproteobacterium, isolated from a freshwater reservoir. Journal of Microbiology. 50: 354-358

     

    Nam, K.-H., K. Ahn, J.-H. Bae, B.-W. Cho, K.-D. Park, H.-K. Lee, Y.-M. Yang, T.-H. Kim, H.-H. Seong, K. Han and H.-S. Kim (2012) Identification of ORF sequences and exercise-induced expression change of thoroughbred horse OXCT1 gene. Gene. 496: 45-48

     

    Lee, J., S. Mun, T. J. Meyer and K. Han (2012) High levels of sequence diversity in the 5' UTRs of human-specific L1 elements. Comparative and Functional Genomics. 2012: 129416

  • 2011

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    Ha, H.-S., W.-K. Chung, K. Ahn, J.-H. Bae, S.-J. Park, J.-W. Moon, K.-H. Nam, K. Han, H.-G. Cho and H.-S. Kim (2011) Development of GEBRET: a web-based analysis tool for retroelements in primate genomes. Genes & Genomics. 33: 679-684

     

    Kim, Y.-J, J.-W. Huh, D.-S. Kim, K. Han and H.-S. Kim (2011) Evolutionary diversification of DYX1C1 transcripts via an HERV-H LTR integration event. Genes and Genetic Systems. 86: 277-284

     

    Jung, Y.-D., J.-W. Huh, D.-S. Kim, Y.-J. Kim, K. Ahn, H.-S. Ha, J.-R. Lee, J.-M. Lee, J.-W. Moon, T.-O. Kim, G.-A. Song, K. Han and H.-S. Kim (2011) Quantitative analysis of transcript variants of CHM gene containing LTR12C element in humans. Gene. 489: 1-5

     

    Han, K.*, D. I. Lou*, S. L. Sawyer (2011) Identification of a genomic reservoir for new TRIM genes in primate genomes. PLoS Genetics. 7: e1002388

     

    Cook. G. W., M. K. Konkel, J. D. Major III, J. A. Walker, K. Han and M. A. Batzer (2011) Alu pair exclusions in the human genome. Mobile DNA. 2: 10

     

    Ha, H.-S., J.-W. Huh, J.-A. Gim, K. Han and H.-S. Kim (2011) Transcriptional variations mediated by an alternative promoter of the FPR3 gene. Mammalian Genome. 22: 621-633

     

    Ahn, K., K. Han and H.-S. Kim (2011) Quantitative expression analysis of the HERV pol gene in human tissues.

    Genes & Genomics 33: 439-443

     

    Han, K.*, T. Y. Lee*, D. E. Nikitopoulos, S. A. Soper and M. C. Murphy (2011) A vertically-stacked, polyer, microfluidic point mutation analyzer: Rapid, high accuracy detection of low-abundance K-ras point mutations.

    Analytical Biochemistry. 417: 211-219 (KH, Corresponding author)

     

    Jeong, H. W., B. R. Son, D. I. Shin, D. Ryu, S. B. Hong, K. Han and K. S. Shin (2011) Characterization of Acinetobacter baumannii co-producing carbapenemases OXA-23 and OXA-66, and armA 16S ribosomal RNA methylase at a university hospital in South Korea. Korean Journal of Clinical Microbiology. 14: 67-73

     

    Nam, K.-H., K. Ahn, J.-H. Bae, K. Han, C.-E. Lee, K.-D. Park, S.-H. Lee, B.-W. Cho and H.-S. Kim (2011) Genomic structure and expression analyses of the PYGM gene in the thoroughbred horse.

    Zoological Science. 28: 276-280

  • 2010

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    Ray, D. A., K. Han, J. A. Walker and M. A. Batzer (2010) Laboratory methods for the analysis of primate mobile elements. Methods in Molecular Biology. 628: 153-179

  • 2009

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    Li, Jing, K. Han, J. Xing, H.-S. Kim, J. Rogers, O. A. Ryder, T. Disotell, B. Yue and M. A. Batzer (2009) Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 448: 233-241

     

    Salem, A.-H., E. Farid, R. Fadel, M. Abu-Hijleh, W. Almawi, K. Han and M. A. Batzer (2009) Distribution of four HIV-1-resistance polymorphisms (CCR5-Δ32, CCR5-m303, CCR2-64I and SDF1-3'A) in the Bahraini population. AIDS Research and Human Retroviruses. 25: 973-977

     

    Xing, J., Y. Zhang, K. Han, A.-H. Salem, S. K. Sen, C. D. Huff, Q. Zhou, E. F. Kirkness, S. Levy, M. A. Batzer and L. B. Jorde (2009) Mobile elements create structural variation: analysis of a complete human genome. Genome Research. 19: 1516-1526

     

    Salem, A.-H., K. Han and M. A. Batzer (2009) Gene frequencies of the human platelet antigen-1 alleles in the Egyptian population. BMC Research Notes. 2: 90

  • 2008

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    Lee, J., K. Han, T. J. Meyer, H.-S. Kim and M. A. Batzer (2008) Chromosomal inversions between the human and chimpanzee lineages caused by retrotransposons. PLoS ONE. 3: e4047

     

    Han, K., J. Lee, T. J. Meyer, P. Remedios, L. Goodwin and M. A. Batzer (2008) L1 recombination-associated deletions generate human genomic variation. Proceedings of the National Academy of Sciences, USA. 105: 19365-19370

  • 2007

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    Han, K.*, J. Lee*, T. J. Meyer, J. Wang, S. K. Sen, D. Srikanta, P. Liang and M. A. Batzer (2007) Alu recombination-mediated structural deletions in the chimpanzee genome. PLoS Genetics. 3: 1939-1949

     

    Sen, S. K., C. T. Huang, K. Han and M. A. Batzer (2007) Endonuclease-independent insertion provides an alternative pathway for L1 retrotransposition in the human genome. Nucleic Acids Research. 35: 3741-3751

     

    Han, K.*, M. Konkel*, J. Xing*, H. Wang*, J. Lee, T. J. Meyer, C. T. Huang, E. Sandifer, K. Hebert, E. W. Barnes, A. F. A. Smit, B. Ullmer and M. A. Batzer (2007) Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science. [Journal cover] 316: 238-240

     

    Rhesus Macaque Genome Sequencing and Analysis Consortium (2007) Evolutionary and biomedical insights from the Rhesus macaque genome. Science. [Journal cover] 316: 222-234

     

    Han, K.*, Lee, J.*, R. Cordaux*, J. Wang, D. J. Hedges, P. Liang# and M. A. Batzer# (2007) Different evolutionary fates of recently integrated human and chimpanzee LINE-1 retrotransposons. Gene. 390: 18-27

  • 2006

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    Han, K.*, Sen, S. K.*, J. Wang, J. Lee, H. Wang, P. A. Callinan, M. Dyer, R. Cordaux, P. Liang and M. A. Batzer (2006) Human genomic deletions mediated by recombination between Alu elements. American Journal of Human Genetics. 79: 45-53

  • 2005

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    Wang, H.*, J. Xing*, D. Grover*, D. J. Hedges, K. Han, J. A. Walker and M. A. Batzer (2005) SVA elements: a hominid specific retroposon family. Journal of Molecular Biology. [Journal cover] 354: 994-1007

     

    Xing, J., H. Wang, K. Han, D. A. Ray, C. H. Huang, L. G. Chemnick, C.-B. Stewart, T. Disotell, O. A. Ryder and M. A. Batzer (2005) A mobile element based phylogeny of Old World monkeys. Molecular Phylogenetics and Evolution. 37: 872-880

     

    Shin, K. S., K. Han, J. Lee, S. B. Hong, B. R. Son, S. J. Youn, J. Kim, H. S. Shin (2005) Imipenem-resistant  Acromobacter xylosxidans carrying blaVIM-2 containing class 1 intron. Diagnostic Microbiology and Infectious Diseases. 53: 215-220

     

    Han, K.*, S. K. Sen *, J. Wang *, P. A. Callinan, J. Lee, R. Cordaux, P. Liang and M. A. Batzer (2005) Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

    Nucleic Acids Research. 33: 4040-4052

     

    Han, K.*, J. Xing*, H. Wang, D. J. Hedges, R. K. Garber, R. Cordaux and M. A. Batzer (2005) Under the genomic radar: the Stealth model of Alu amplification. Genome Research. [Journal cover] 15: 655-664

  • 2004

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    Xing, J., D. J. Hedges, K. Han, H. Wang, R. Cordaux and M. A. Batzer (2004) Alu Elements Mutation Spectra: Molecular Clocks and the Effect of DNA Methylation. Journal of Molecular Biology. 334: 675-682

  • 2003

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    1.

    Han, K., Y. T. Jung, and S. Y. Son (2003) Phylogenetic Analysis of Phenanthrene-Degrading Sphingomonas. Journal of Microbiology and Biotechnology.  13: 942-948

     

    Han, K., S. H. Kim, and S. Y. Son (2003) Isolation and Characterization of PAHs Degrading Sphingomonas sp. K-19. The Korean Journal of Microbiology. 39: 288-292

* These authors contributed

   equally to this work.

 

# These authors are equal

    senior authors.

 

@ These authors are

     Co-correspondence